Well, to me the most important thing is the encryption and hence I won't say which is better since they are both the same in terms of encryption strength.
However, there will be two groups of people - one say you should only use single-root while the other say all the way for chained-root. IMHO the pros and cons are arguable, and you can find all sort of reasons from google, e.g. http://www.trustico.com/chained/chained-ssl.php vs http://www.whichssl.com/intermediate_certificates2.html
One note though, you do need to install the root cert for chained-root SSL. I do prefer single-root SSL, but that's purely my personal preference.